The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0466
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 2181303
End posion on genome 2181218
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position
atatagacat
tRNA gene sequence
GCCGCGGTAGCTCAGTTGGCAGAGCGCCGGGCTGTTAACCCGGTGGTCGGTGGTCCGAGT
CCACCCCGCGGCGcgt
Downstream region at tRNA end position
ctacaaaact
Secondary structure (Cloverleaf model)
>At0466	Asn	GTT
                   t      Gcgt ctacaaaact
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T G
                    T     C C A C C     A
      T G A        A      | | | | |     G
    T       C T C G       G G T G G     C
    G       | | | |                 T C
    G       G A G C
      C A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGCTCAGTTGGCAGAGCGCCGGGCTGTTAaatccttacggacACCCGGTGGT
CGGTGGTCCGAGTCCACCCCGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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