The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0467
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 48739
End posion on genome 48814
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position
attatagaag
tRNA gene sequence
GGGGCCGTAGTCTAGCCTGGACTAGGACGCCAGGCTTGGGCCCTGGTGATCGCGGGTTCA
AATCCCGCCGGCCCCActt
Downstream region at tRNA end position
acggggcttg
Secondary structure (Cloverleaf model)
>At0467	Pro	TGG
                   g      Actt acggggcttg
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       G C G G G     C
  G         + | | |                 T T
  G         G G A C
    A C T A        G     TGATC
                    C - G
                    C - G
                    A - T
                    G - C
                    G - C
                  C       C
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGACTAGGACGCCAGGCTTGGGCCCTGGTGATCGCGGGTTCA
AATCCCGCCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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