The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0468
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 49344
End posion on genome 49430
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
tttttatcac
tRNA gene sequence 
GCCGGAGTAGCTCAGTTGGCAGAGCGCCCGGCTGTTAACCGGGTGGTCGGAGGTTCGAGT
CCTCCCTCCGGCGcta
Downstream region at tRNA end position 
ttctagaagt
Secondary structure (Cloverleaf model)
>At0468	Asn	GTT
                   c      Gcta ttctagaagt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C          T G
                    T     C C T C C     A
      T G A        A      | | | | |     G
    T       C T C G       G G A G G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGAGTAGCTCAGTTGGCAGAGCGCCCGGCTGTTAtgccgggtgcagaaACCGGGTGG
TCGGAGGTTCGAGTCCTCCCTCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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