The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0469
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 114659
End posion on genome 114733
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
gctagtaaaa
tRNA gene sequence 
GGGCCCGTCGTCTAGCTTGGTTAGGACGTCGCCCTCACACGGCGAAGATCCTGGGTTCAA
GTCCCAGCGGGCCCAtgt
Downstream region at tRNA end position 
gggggatacc
Secondary structure (Cloverleaf model)
>At0469	Val	CAC
                   a      Atgt gggggatacc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G A C C C     A
    T C G A        C      | | | | |     A
  T         T C T G       C T G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AGATC
                    T - A
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGCTTGGTTAGGACGTCGCCCTCACACGGCGAAGATCCTGGGTTCAA
GTCCCAGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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