The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0470
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 222725
End posion on genome 222798
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
tttattcgag
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGAAGAGTGCTCGGTTTGCACCCGAGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCActt
Downstream region at tRNA end position 
tctatagatg
Secondary structure (Cloverleaf model)
>At0470	Ala	TGC
                   g      Actt tctatagatg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | +                 T T
    G       G A G T
      G A A        G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  T       C
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGAAGAGTGCTCGGTTTGCACCCGAGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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