The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0471
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 246930
End posion on genome 247004
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
tatttatgtt
tRNA gene sequence 
GGACCCGTAGCTCAGCCAGGATGGAGCGCCGGCCTCCGGAGCCAGAGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGttg
Downstream region at tRNA end position 
tggggttagg
Secondary structure (Cloverleaf model)
>At0471	Arg	CCG
                   t      Gttg tggggttagg
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A T G          G     AGGTC
                    C - G
                    C   A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTCAGCCAGGATGGAGCGCCGGCCTCCGGAGCCAGAGGTCCCGGGTTCAA
ATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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