The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0472
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 331724
End posion on genome 331799
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
taaataatag
tRNA gene sequence 
GGGTCCGTGGTCTAGCCTGGACTAGGATGCGACGTTCGGGTCGTCGTGGTCCCGGGTTCA
AATCCCGGCGGACCCAtac
Downstream region at tRNA end position 
ataaattaac
Secondary structure (Cloverleaf model)
>At0472	Pro	CGG
                   g      Atac ataaattaac
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A C T A        G     TGGTC
                    C - G
                    G - C
                    A - T
                    C - G
                    G - C
                  T       T
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTCCGTGGTCTAGCCTGGACTAGGATGCGACGTTCGGGTCGTCGTGGTCCCGGGTTCA
AATCCCGGCGGACCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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