The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0474
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 338925
End posion on genome 339000
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
attatagagt
tRNA gene sequence 
GCGGCCGTAGTCTAGGCTGGATTAGGACGCCGGCCTTCCAAGCCGGTGATCCCGGGTTCA
AATCCCGGCGGCCGCAtac
Downstream region at tRNA end position 
ataatgtgat
Secondary structure (Cloverleaf model)
>At0474	Gly	TCC
                   t      Atac ataatgtgat
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C G G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A T T A        G     TGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTAGTCTAGGCTGGATTAGGACGCCGGCCTTCCAAGCCGGTGATCCCGGGTTCA
AATCCCGGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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