The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0478
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 637164
End posion on genome 637263
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ataatagatt
tRNA gene sequence 
GCGGGGGTGCCCGAGCCTGGTCAAAGGGGGCGGACTTAAGATCCGCTGGCGAAGGCCTGC
ACGGGTTCAAATCCCGTCCCCCGCAtga
Downstream region at tRNA end position 
tagttctatt
Secondary structure (Cloverleaf model)
>At0478	Leu	TAA
                   t      Atga tagttctatt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C C C     A
    C C G A        G      | | | | |     A
  T         G C C C       A C G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCGAAGGCCTGC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCTGGTCAAAGGGGGCGGACTTAAGacccccaagtaagagATCCG
CTGGCGAAGGCCTGCACGGGTTCAAATCCCGTCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK