The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0483
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 789937
End posion on genome 790009
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
atttaaatac
tRNA gene sequence 
AGCCGGGTAGTCTAGTGGTCAAGGATCCAGGGCTCTGGCCCCTGGGACCAGGGTTCGAAT
CCCTGCCCGGCTAcct
Downstream region at tRNA end position 
agctagtaaa
Secondary structure (Cloverleaf model)
>At0483	Gln	CTG
                   c      Acct agctagtaaa
                     A - T
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G T C C C     A
      T G A        A      | | | | |     G
    G       T C T G       C A G G G     C
    G       + | | +                 T T
    T       G G A T
      C A A        C     GGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCGGGTAGTCTAGTGGTCAAGGATCCAGGGCTCTGGCCCCTGGGACCAGGGTTCGAAT
CCCTGCCCGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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