The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0484
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 837019
End posion on genome 837118
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
tttaaaatgt
tRNA gene sequence 
GCGGGGGTGCCCGAGCTGGTCAAAGGGGGCGGACTCAAGATCCGCTGGCGAAGGCCTTCG
CGGGTTCAAATCCCGTCCCCCGCAtcc
Downstream region at tRNA end position 
atttcttcaa
Secondary structure (Cloverleaf model)
>At0484	Leu	CAA
                   t      Atcc atttcttcaa
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C C C     A
    T C G A        G      + | | | |     A
  G         G C C C       G C G G G     C
  G           | | |                 T T
  T         A G G G
    C A A          G     TGGCGAAGGCCTTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCTGGTCAAAGGGGGCGGACTCAAGaccccttaagtgagagATCCG
CTGGCGAAGGCCTTCGCGGGTTCAAATCCCGTCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK