The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0491
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 142570
End posion on genome 142457
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tattattgtt
tRNA gene sequence 
GCCGGGGTGGCCGAGTGGTCTAAGGCGGCGGGCCGCAGACCCGTTATTTCGCGGGTTCGA
ATCCCGCCCCCGGCTttt
Downstream region at tRNA end position 
agaagagatt
Secondary structure (Cloverleaf model)
>At0491	Cys	GCA
                   t      Tttt agaagagatt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      T G A        G      | | | | |     G
    G       G C C G       G C G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TATTTC
                    G + T
                   *C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  C       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGTGGTCTAAGGCGGCactaccagcccatcggtagcgctagGGGCCG
CAGtggtactagttgacACCCGTTATTTCGCGGGTTCGAATCCCGCCCCCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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