The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0492
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 179553
End posion on genome 179480
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position
atagcggctg
tRNA gene sequence
GCTCGGGTAGCTCAGCCTGGAAGAGCGCCGGGCTGTGGACCCGGAAGTCCCGGGTTCAAA
TCCCGGCCCGAGCCctt
Downstream region at tRNA end position
cttttgatca
Secondary structure (Cloverleaf model)
>At0492	His	GTG
                   g      Cctt cttttgatca
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G A A        G     AAGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCGGGTAGCTCAGCCTGGAAGAGCGCCGGGCTGTGGACCCGGAAGTCCCGGGTTCAAA
TCCCGGCCCGAGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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