The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0495
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 185227
End posion on genome 185144
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
atagtagagt
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGACTAAGGGGCTGGCCTGGAGAGCCAGTGGGGGTTTCCCCGCG
CGGGTTCAAATCCCGCCCCCGGCGcta
Downstream region at tRNA end position 
tttaaattta
Secondary structure (Cloverleaf model)
>At0495	Ser	GGA
                   t      Gcta tttaaattta
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    A       A G G G
      C T A        G     TGGGGGTTTCCCCGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGACTAAGGGGCTGGCCTGGAGAGCCAGTGGGGGTTTCCCCGCG
CGGGTTCAAATCCCGCCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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