The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0496
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 206424
End posion on genome 206337
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position
gtaaaatgat
tRNA gene sequence
GCCGCCGTAGCTCAGCCTGGTTAGAGCGCCGGCCTCGTAAGCCGGCGGTCGCGGGTTCGA
ATCCCGCCGGCGGCTtgg
Downstream region at tRNA end position
aatctaatta
Secondary structure (Cloverleaf model)
>At0496	Thr	CGT
                   t      Ttgg aatctaatta
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
    C C G A        A      | | | | |     G
  T         C T C G       G C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     CGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCTGGTTAGAGCGCCGGCCTCGTAcccaaagtgagatAGCCGGCG
GTCGCGGGTTCGAATCCCGCCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK