The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0497
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 227569
End posion on genome 227495
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
ctagtattaa
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGTTAGGACGTCGCCCTGACACGGCGGAGGTCCTGGGTTCAA
ATCCCAGCGGGCCCAtgt
Downstream region at tRNA end position 
tgtgggggat
Secondary structure (Cloverleaf model)
>At0497	Val	GAC
                   a      Atgt tgtgggggat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G A C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C T G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AGGTC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGCCTGGTTAGGACGTCGCCCTGACACGGCGGAGGTCCTGGGTTCAA
ATCCCAGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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