The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0498
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 249085
End posion on genome 248996
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
attttatgtt
tRNA gene sequence 
GGACCCGTAGCTCAGCCAGGACGGAGCGCCGGCCTTCTAAGCCGGCGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGcac
Downstream region at tRNA end position 
atattattac
Secondary structure (Cloverleaf model)
>At0498	Arg	TCT
                   t      Gcac atattattac
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C G          G     CGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTCAGCCAGGACGGAGCGCCGGCCTTCTAgcgtctaaggaggatAGCCGG
CGGTCCCGGGTTCAAATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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