The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0499
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 290978
End posion on genome 290891
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
tctaataatt
tRNA gene sequence 
GGACCCGTAGCTCAGCCAGGATGGAGCGCCGGCCTCCTAAGCCGGTGGTCGCGGGTTCGA
ATCCCGCCGGGTCCGcac
Downstream region at tRNA end position 
attctcataa
Secondary structure (Cloverleaf model)
>At0499	Arg	CCT
                   t      Gcac attctcataa
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
    C C G A        A      | | | | |     G
  A         C T C G       G C G G G     C
  G         | | | |                 T T
  G         G A G C
    A T G          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTCAGCCAGGATGGAGCGCCGGCCTCCTAactttcggaagaaAGCCGGTG
GTCGCGGGTTCGAATCCCGCCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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