The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0500
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 341916
End posion on genome 341832
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
actataattt
tRNA gene sequence 
GCCGGGGTGCCCGAGTGGTCCAAGGGGCTGGCCTTGAGAGCCAGTAGGTGTCTAGCCTGC
GCGGGTTCAAATCCCGCCCCCGGCGcta
Downstream region at tRNA end position 
agcgtttaac
Secondary structure (Cloverleaf model)
>At0500	Ser	TGA
                   t      Gcta agcgtttaac
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      T G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    T       A G G G
      C C A        G     TAGGTGTCTAGCCTGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGTGGTCCAAGGGGCTGGCCTTGAGAGCCAGTAGGTGTCTAGCCTGC
GCGGGTTCAAATCCCGCCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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