The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0501
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 453321
End posion on genome 453232
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
atgaggactt
tRNA gene sequence 
GCCGCGGTGGTTTAGCCCGGTCAAGAATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCActt
Downstream region at tRNA end position 
tgggattatg
Secondary structure (Cloverleaf model)
>At0501	Glu	TTC
                   t      Actt tgggattatg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T T T G       C C G G G     C
  G         + | | +                 T T
  G         G A A T
    T C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTGGTTTAGCCCGGTCAagcgcaggcaccgaaAGAATGCGGGCCTTTCGAGCCC
GTGACCCGGGTTCAAATCCCGGCCGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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