The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0502
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 485882
End posion on genome 485808
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position
agtattttga
tRNA gene sequence
GGACCCGTAGCTCAGCCAGGACGGAGCGCCGGCCTGCGGAGCCGGAGGTCCCGGGTTCAA
GTCCCGGCGGGTCCGttg
Downstream region at tRNA end position
tggggttagg
Secondary structure (Cloverleaf model)
>At0502	Arg	GCG
                   a      Gttg tggggttagg
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C G          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTCAGCCAGGACGGAGCGCCGGCCTGCGGAGCCGGAGGTCCCGGGTTCAA
GTCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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