The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0503
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 590292
End posion on genome 590217
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
tagtgaaact
tRNA gene sequence 
GCGGCCGTAGTCTAGGCTGGATTAGGACGCCGGCCTCCCAAGCCGGTGATCCCGGGTTCA
AATCCCGGCGGCCGCAtac
Downstream region at tRNA end position 
atcttcttta
Secondary structure (Cloverleaf model)
>At0503	Gly	CCC
                   t      Atac atcttcttta
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C G G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A T T A        G     TGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTAGTCTAGGCTGGATTAGGACGCCGGCCTCCCAAGCCGGTGATCCCGGGTTCA
AATCCCGGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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