The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0507
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 648313
End posion on genome 648224
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position
tagcgaaaac
tRNA gene sequence
GCCGCGGTGGTTTAGCCCGGTCAAGAATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCActa
Downstream region at tRNA end position
attttatgat
Secondary structure (Cloverleaf model)
>At0507	Glu	CTC
                   c      Acta attttatgat
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T T T G       C C G G G     C
  G         + | | +                 T T
  G         G A A T
    T C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTGGTTTAGCCCGGTCAagcgcaggcaccgaaAGAATGCGGGCCTCTCGAGCCC
GTGACCCGGGTTCAAATCCCGGCCGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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