The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0509
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 789766
End posion on genome 789677
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
ttttcttaat
tRNA gene sequence 
GCCGCCGTAGCTCAGCCTGGTTAGAGCGCCGGCCTTGTAAGCCGGCGGTCGCGGGTTCGA
ATCCCGCCGGCGGCTtct
Downstream region at tRNA end position 
tctaaatatt
Secondary structure (Cloverleaf model)
>At0509	Thr	TGT
                   t      Ttct tctaaatatt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
    C C G A        A      | | | | |     G
  T         C T C G       G C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     CGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCTGGTTAGAGCGCCGGCCTTGTAagttactgcctagatAGCCGG
CGGTCGCGGGTTCGAATCCCGCCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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