The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0510
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 898373
End posion on genome 898277
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position
ctttattaaa
tRNA gene sequence
GGGGCCGTAGTCTAGCTTGGACTAGGATGCCAGCCTGGGGCGCTGGTGGTCCCGGGTTCA
AATCCCGGCGGCCCCAttg
Downstream region at tRNA end position
tggggggtac
Secondary structure (Cloverleaf model)
>At0510	Pro	GGG
                   a      Attg tggggggtac
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    T C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A C T A        G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       G *
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCTTGGACTAGGATGCCAGCCTGGGGatactaccctaaccaccaga
aCGCTGGTGGTCCCGGGTTCAAATCCCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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