The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0512
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 2135500
End posion on genome 2135416
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position
gtattgatat
tRNA gene sequence
GCGGGGGTGCCCGAGCTAGGGCAAAGGGGGCGGACTGAGGCTCCGCTGGCGAAGGCCTGC
ACGGGTTCAAATCCCGTCCCCCGCAtat
Downstream region at tRNA end position
accctttaac
Secondary structure (Cloverleaf model)
>At0512	Leu	GAG
                   t      Atat accctttaac
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C C C     A
    T C G A        G      | | | | |     A
  A         G C C C       A C G G G     C
  G           | | |                 T T
  G         A G G G
    G C A A        G     TGGCGAAGGCCTGC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       C
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCTAGGGCAAAGGGGGCGGACTGAGGCTCCGCTGGCGAAGGCCTGC
ACGGGTTCAAATCCCGTCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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