The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0515
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 282974
End posion on genome 283057
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position
tgttatactt
tRNA gene sequence
GCCGGGGTGCCCGAGCGGTCTAAGGGGGCGGCCTGGAGAGCCGTTGGGGGTTTCCCCGCG
CGGGTTCAAGTCCCGCCCCCGGCGtac
Downstream region at tRNA end position
taaatcttgc
Secondary structure (Cloverleaf model)
>At0515	Ser	GGA
                   t      Gtac taaatcttgc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    T       A G G G
      C T A        G     TGGGGGTTTCCCCGC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGTCTAAGGGGGCGGCCTGGAGAGCCGTTGGGGGTTTCCCCGCG
CGGGTTCAAGTCCCGCCCCCGGCG
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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