The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0521
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 367006
End posion on genome 367116
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
ttttatactt
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGACTAAGGGGGTAGGCTCGAGACCTACTGCCCCTATGGGGCAC
GCGGGTTCAAATCCCGCCCCCGGCGcgt
Downstream region at tRNA end position 
aataatttta
Secondary structure (Cloverleaf model)
>At0521	Ser	CGA
                   t      Gcgt aataatttta
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    A       A G G G
      C T A        G     TGCCCCTATGGGGCAC
                    G - C
                    T - A
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G *
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGACTAAGGGGGTAGGCTCGAGactttccagcgttaagatggcg
tgcgACCTACTGCCCCTATGGGGCACGCGGGTTCAAATCCCGCCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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