The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0523
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 416128
End posion on genome 416222
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
taattaaatt
tRNA gene sequence 
GCCGGGGTGCCCGAGTGGACTAAGGGGCTGGCCTTGAGAGCCAGTGGGGATCTCCCCGCG
CGGGTTCAAATCCCGCCCCCGGCGtcg
Downstream region at tRNA end position 
tataatatat
Secondary structure (Cloverleaf model)
>At0523	Ser	TGA
                   t      Gtcg tataatatat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      T G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    A       A G G G
      C T A        G     TGGGGATCTCCCCGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGTGGACTAAGGGGCTGGCCTTGAGagcttcaggttAGCCAGTGGGG
ATCTCCCCGCGCGGGTTCAAATCCCGCCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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