The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0524
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 418363
End posion on genome 418438
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
tatatatgtt
tRNA gene sequence 
GCGGCCGTCGTCTAGTCTGGATTAGGACGCCGGCCTCCCAAGCCGGTAATCCCGGGTTCA
AATCCCGGCGGCCGCActg
Downstream region at tRNA end position 
tgggggacac
Secondary structure (Cloverleaf model)
>At0524	Gly	CCC
                   t      Actg tgggggacac
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C T G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A T T A        G     TAATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTCGTCTAGTCTGGATTAGGACGCCGGCCTCCCAAGCCGGTAATCCCGGGTTCA
AATCCCGGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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