The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0526
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 462371
End posion on genome 462454
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tctagggcac
tRNA gene sequence 
GCGGGGGTGCCCGAGCTGGTCAAAGGGGGCGGACTTAAGATCCGCTGGCGAAGGCCTGCG
TGGGTTCAAGTCCCACCCCCCGCAcgc
Downstream region at tRNA end position 
tgcttttacg
Secondary structure (Cloverleaf model)
>At0526	Leu	TAA
                   c      Acgc tgcttttacg
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     C A C C C     A
    T C G A        G      | | | | |     A
  G         G C C C       G T G G G     C
  G           | | |                 T T
  T         A G G G
    C A A          G     TGGCGAAGGCCTGC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCTGGTCAAAGGGGGCGGACTTAAGATCCGCTGGCGAAGGCCTGCG
TGGGTTCAAGTCCCACCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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