The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0528
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 936179
End posion on genome 936268
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
tgattaatat
tRNA gene sequence 
GGGCCCGTAGCTTAGCTTGGTAGAGCGCCCGGCTGATAACCGGGAGGTCGCGGGTTCAAG
TCCCGCCGGGCCCAtac
Downstream region at tRNA end position 
ttgtgaaagt
Secondary structure (Cloverleaf model)
>At0528	Ile	GAT
                   t      Atac ttgtgaaagt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     C G C C C     A
      C G A        A      | | | | |     A
    T       T T C G       G C G G G     C
    T       + | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGCTTGGTAGAGCGCCCGGCTGATAacactcccggtcagacACCGGG
AGGTCGCGGGTTCAAGTCCCGCCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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