The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0529
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 944046
End posion on genome 944120
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
aatattaaat
tRNA gene sequence 
GCCGCGGTAGCTCAGCCTGGCTAGAGCGTTGCCCTGGTAAGGCAAAGGTCCCGGGTTCAA
ATCCCGGCCGCGGCTtgt
Downstream region at tRNA end position 
gggggatatc
Secondary structure (Cloverleaf model)
>At0529	Thr	GGT
                   t      Ttgt gggggatatc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    C T A          G     AGGTC
                    T - A
                    T - A
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGCTCAGCCTGGCTAGAGCGTTGCCCTGGTAAGGCAAAGGTCCCGGGTTCAA
ATCCCGGCCGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK