The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0530
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 1201508
End posion on genome 1201599
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position
atttttattt
tRNA gene sequence
GCCGCTGTAGCTCAGCCTGGTTAGAGCGCCGGCCTTGTAAGCCGGCGGTCCGGGGTTCAA
ATCCCCGCAGCGGCTttt
Downstream region at tRNA end position
ttctccctca
Secondary structure (Cloverleaf model)
>At0530	Thr	TGT
                   t      Tttt ttctccctca
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C G G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     CGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCTGTAGCTCAGCCTGGTTAGAGCGCCGGCCTTGTAagggtaaaggacaggacAGCC
GGCGGTCCGGGGTTCAAATCCCCGCAGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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