The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0532
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 1366019
End posion on genome 1366091
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
tattattatt
tRNA gene sequence 
AGCCGGGTCGTCTAGTGGTCAAGGATCGAGGGCTTTGGCCCCTCGGACCTGGGTTCAAAT
CCCAGCCCGGCTAcct
Downstream region at tRNA end position 
ttttataaaa
Secondary structure (Cloverleaf model)
>At0532	Gln	TTG
                   t      Acct ttttataaaa
                     A - T
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G A C C C     A
      T G A        C      | | | | |     A
    G       T C T G       C T G G G     C
    G       + | | +                 T T
    T       G G A T
      C A A        C     GGAC
                    G - C
                    A - T
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G
                    T T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCGGGTCGTCTAGTGGTCAAGGATCGAGGGCTTTGGCCCCTCGGACCTGGGTTCAAAT
CCCAGCCCGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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