The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0535
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 2105122
End posion on genome 2105197
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
taatattgct
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGACTAGGACGCAAGGCTTGGGCCCTTGTGGTCGCGGGTTCA
AATCCCGCCGGCCCCAtag
Downstream region at tRNA end position 
tttgtgaata
Secondary structure (Cloverleaf model)
>At0535	Pro	TGG
                   t      Atag tttgtgaata
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       G C G G G     C
  G         + | | |                 T T
  G         G G A C
    A C T A        G     TGGTC
                    C - G
                    A - T
                    A - T
                    G - C
                    G - C
                  C       C
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGACTAGGACGCAAGGCTTGGGCCCTTGTGGTCGCGGGTTCA
AATCCCGCCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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