The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0540
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 168985
End posion on genome 168913
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position
tattattatt
tRNA gene sequence
AGCCGGGTCGTCTAGTGGTCAAGGATCGAGGGCTCTGGCCCCTCGGACCTGGGTTCAAAT
CCCAGCCCGGCTAcct
Downstream region at tRNA end position
tacttagagc
Secondary structure (Cloverleaf model)
>At0540	Gln	CTG
                   t      Acct tacttagagc
                     A - T
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G A C C C     A
      T G A        C      | | | | |     A
    G       T C T G       C T G G G     C
    G       + | | +                 T T
    T       G G A T
      C A A        C     GGAC
                    G - C
                    A - T
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCGGGTCGTCTAGTGGTCAAGGATCGAGGGCTCTGGCCCCTCGGACCTGGGTTCAAAT
CCCAGCCCGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK