The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0541
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 191251
End posion on genome 191161
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
actacgagac
tRNA gene sequence 
GCCGCGGTAGTATAGCCCGGTCAAGTATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCActa
Downstream region at tRNA end position 
atttttaatt
Secondary structure (Cloverleaf model)
>At0541	Glu	TTC
                   c      Acta atttttaatt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    T C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGTATAGCCCGGTCAagcacgctgcgccgaaAGTATGCGGGCCTTTCGAGCC
CGTGACCCGGGTTCAAATCCCGGCCGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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