The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0543
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 224532
End posion on genome 224458
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position
aatatggtat
tRNA gene sequence
GGGCCCGTCGTCTAGTCTGGTTAGGACGCCACCCTCACACGGTGGAGATCCGGGGTTCAA
GTCCCCGCGGGCCCAtag
Downstream region at tRNA end position
tagggccata
Secondary structure (Cloverleaf model)
>At0543	Val	CAC
                   t      Atag tagggccata
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
    C T G A        C      | | | | |     A
  T         T C T G       C G G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AGATC
                    C - G
                    C - G
                    A - T
                    C - G
                    C - G
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGTCTGGTTAGGACGCCACCCTCACACGGTGGAGATCCGGGGTTCAA
GTCCCCGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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