The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0544
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 226355
End posion on genome 226268
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ttgaatacat
tRNA gene sequence 
GCCGGGGTGGCCGAGAGGTTAAGGCGGCGGGCCGCAGACCCGTTATTTCGCGGGTTCAAG
TCCCGCCCCCGGCTtat
Downstream region at tRNA end position 
ttaaaaaaat
Secondary structure (Cloverleaf model)
>At0544	Cys	GCA
                   t      Ttat ttaaaaaaat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     C G C C C     A
      A G A        G      | | | | |     A
    G       G C C G       G C G G G     C
    G         | | |                 T T
    T       A G G C
      T A          G     TATTTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  C       G *
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGAGGTTAAGGCGGCGGGCCGCAGagtttattgcagatACCCGTTAT
TTCGCGGGTTCAAGTCCCGCCCCCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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