The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0545
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 274313
End posion on genome 274239
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
aatgggattg
tRNA gene sequence 
GCTCGGGTAGCTCAGCCTGGTTAGAGCGACGGGCTGTGGACCCGTAGGTCCCGGGTTCAA
GTCCCGGCCCGAGCCcta
Downstream region at tRNA end position 
atttaacgtt
Secondary structure (Cloverleaf model)
>At0545	His	GTG
                   g      Ccta atttaacgtt
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C
                     G - C          T G
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCGGGTAGCTCAGCCTGGTTAGAGCGACGGGCTGTGGACCCGTAGGTCCCGGGTTCAA
GTCCCGGCCCGAGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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