The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0549
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 371173
End posion on genome 371083
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
atataataac
tRNA gene sequence 
GCCGCGGTAGTATAGCCCGGTCAAGTATGCGGGCCTCTCAAGCCCGTGGCCCGGGTTCAA
ATCCCGGCCGCGGCActa
Downstream region at tRNA end position 
atttttaatt
Secondary structure (Cloverleaf model)
>At0549	Glu	CTC
                   c      Acta atttttaatt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    T C A A        G     TGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGTATAGCCCGGTCAagctcgatacgccgaaAGTATGCGGGCCTCTCAAGCC
CGTGGCCCGGGTTCAAATCCCGGCCGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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