The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0551
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 482657
End posion on genome 482554
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
aaatgtttgt
tRNA gene sequence 
GCGGGGGTGCCCGAGCAAGGTCAAAGGGGGCGGACTGAGGCTCCGCTGGCGAAGGCCTGC
GTGGGTTCAAGTCCCACCCCCCGCAtca
Downstream region at tRNA end position 
atttaaacct
Secondary structure (Cloverleaf model)
>At0551	Leu	GAG
                   t      Atca atttaaacct
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     C A C C C     A
    A C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCGAAGGCCTGC
                    G - C
                    C - G
                    G - C
                   *G - C
                    A - T
                  C       C
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCAAGGTCAAAGGGGGCGGtcccttaaagggggcctaaACTGAGGC
TCCGCTGGCGAAGGCCTGCGTGGGTTCAAGTCCCACCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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