The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0553
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 1257721
End posion on genome 1257634
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
gaatatacat
tRNA gene sequence 
GGACCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTGCGGAGCCGGCGGTCCCGGGTTCAA
GTCCCGGCGGGTCCGcta
Downstream region at tRNA end position 
ttttacatcc
Secondary structure (Cloverleaf model)
>At0553	Arg	GCG
                   t      Gcta ttttacatcc
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     CGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTGCGGttttaaagtagggAGCCGGCG
GTCCCGGGTTCAAGTCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK