The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0555
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 1370683
End posion on genome 1370585
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
attttatagc
tRNA gene sequence 
GGACCCGTAGCTCAGCCAGGACAGAGCGCCGGCCTCCTAAGCCGGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGcta
Downstream region at tRNA end position 
tatatttaag
Secondary structure (Cloverleaf model)
>At0555	Arg	CCT
                   c      Gcta tatatttaag
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTCAGCCAGGACAGAGCGCCGGCCTCCTAttttggccggtgtataaagaa
gacAGCCGGTGGTCCCGGGTTCAAATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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