The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0556
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 1429759
End posion on genome 1429685
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
catttaatga
tRNA gene sequence 
GGGCCCGTAGCTTAGCCAGGACAAAGCACGGGTCTCCGGAACCCGAGATCCCGGGTTCAA
ATCCCGGCGGGCCCGtca
Downstream region at tRNA end position 
taaacagtta
Secondary structure (Cloverleaf model)
>At0556	Arg	CCG
                   a      Gtca taaacagtta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         T T C G       C C G G G     C
  G         | | | |                 T T
  G         A A G C
    A C A          A     AGATC
                    C - G
                    G - C
                    G - C
                    G - C
                    T - A
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGCCAGGACAAAGCACGGGTCTCCGGAACCCGAGATCCCGGGTTCAA
ATCCCGGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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