The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0559
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 42110
End posion on genome 42186
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
tttctaggcg
tRNA gene sequence 
AGCCCGGTGGTGTAGCGGTCAAGCATGGCGGGCTTTGGACCCGCAGATCCGGGGTTCGAA
TCCCCGCCGGGCTACCA
Downstream region at tRNA end position 
cttctacggc
Secondary structure (Cloverleaf model)
>At0559	Gln	TTG
                   g      ACCA cttctacggc
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
      C G A        G      | | | | |     G
    G       T G T G       C G G G G     C
    G       + | | +                 T T
    T       G C A T
      C A A        G     AGATC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGGTGGTGTAGCGGTCAAGCATGGCGGGCTTTGGACCCGCAGATCCGGGGTTCGAA
TCCCCGCCGGGCTACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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