The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0560
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 242880
End posion on genome 242973
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
gctctagaaa
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTAGGATGCCTCCCTGACGCGGAGGTGATCCCGGGTTCGAATC
CCGGCGGGCCCACCA
Downstream region at tRNA end position 
ctcctcggcg
Secondary structure (Cloverleaf model)
>At0560	Val	GAC
                   a      ACCA ctcctcggcg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        T A        G     TGATC
                    C - G
                   *C - G
                    T - A
                    C - G
                    C - G
                  C       C
                  T       G
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTAGGATGCCacgcgtgtacgcgcatcagTCCCTGACGCGGAG
GTGATCCCGGGTTCGAATCCCGGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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