The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0561
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 267813
End posion on genome 267924
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position
ctgttacaga
tRNA gene sequence
GGGCCGGTAGCTCAGCCAGGTAGAGCGGCGGGCTCCAGACCCGAAGGTCCAGGGTTCAAG
TCCCTGCCGGCCCACCA
Downstream region at tRNA end position
tagctttaag
Secondary structure (Cloverleaf model)
>At0561	Trp	CCA
                   a      ACCA tagctttaag
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T G
                    T     G T C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C A G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G   A
                    C - G
                    G - C
                   *G - C
                    G - C
                  C       A
                  T       G
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCAGGTAGAGCGGCGGtcgagttaggtcgagGCTCCAGACCCGAA
GagcactaggtgtgctcggaaGTCCAGGGTTCAAGTCCCTGCCGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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