The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0562
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 268301
End posion on genome 268409
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
gtttgctcta
tRNA gene sequence 
GCCCCGGTCGTCTAGTGGTCCAGGATGGCGGCCTGTCGAGCCGCAGAACCCGGGTTCGAA
TCCCGGCCGGGGCGCCA
Downstream region at tRNA end position 
ctacgcgtta
Secondary structure (Cloverleaf model)
>At0562	Asp	GTC
                   a      GCCA ctacgcgtta
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      T G A        C      | | | | |     G
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    T       G G A T
      C C A        G     AGAAC
                    G - C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTCGTCTAGTGGTCCAGGAaggtttgccctggagTGGCGGCCTGTCGAGCCGCA
GagccttaaggcgcggagAACCCGGGTTCGAATCCCGGCCGGGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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